Table 5 Average per-target correlation and loss on Stage 1 and Stage 2 for DeepQA and its training features on CASP11. The significance between DeepQA and individual feature was assessed by Wilcoxon signed ranked sum paired t-test*, and its P-value was included to represent the improvement of DeepQA against its input features
From: DeepQA: improving the estimation of single protein model quality with deep belief networks
QA methods | Corr. onstage 1/P-value | Loss on stage 1/P-value | Corr. on stage 2/P-value | Loss on stage 2/P-value |
|---|---|---|---|---|
DeepQA | 0.64/- | 0.09/- | 0.42/- | 0.06/- |
Dope | 0.54/1.77E-06 | 0.11/0.0421 | 0.30/4.63E-10 | 0.08/2.76E-01 |
EC score | 0.37/4.29E-11 | 0.18/5.71E-07 | 0.02/3.23E-14 | 0.14/2.08E-10 |
GOAP score | 0.54/2.74E-05 | 0.13/0.0016 | 0.31/5.07E-07 | 0.07/1.06E-01 |
ModelEvaluator score | 0.56/0.0001 | 0.10/0.2160 | 0.28/1.87E-09 | 0.08/1.99E-02 |
OPUS score | 0.43/2.14E-11 | 0.12/0.0588 | 0.30/4.53E-09 | 0.08/3.54E-01 |
Qprob score | 0.63/0.8080 | 0.09/0.9382 | 0.38/8.63E-03 | 0.06/7.12E-01 |
RWplus score | 0.54/4.80E-06 | 0.14/0.0009 | 0.30/9.41E-09 | 0.08/4.49E-02 |
SP score | 0.47/3.07E-10 | 0.14/0.0067 | 0.26/6.17E-10 | 0.10/1.10E-05 |
SU score | 0.50/3.78E-09 | 0.18/4.94E-07 | 0.19/6.34E-11 | 0.11/3.95E-07 |
Mean | 0.52/0.09 | 0.13/0.14 | 0.27/0.00 | 0.09/0.17 |