BMC Bioinformatics

Table 2 Gene activity prediction frequencies for CD4+ T cells based on five node CART trees for each of 39 histone modifications on the 24 nucleosome sized regions

From: Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines

Histone modification	H2BK5ac	H4K91ac	H3K9ac	H2BK120ac	H3K27ac	H3K4ac	H3K79me3	H3K79me2	H4K5ac	H3K36ac
Prediction accuracy	0.753	0.723	0.720	0.718	0.713	0.713	0.711	0.707	0.701	0.695
Histone modification	H4K8ac	H3K18ac	H2BK20ac	H2AZ	H3K79me1	H2AK9ac	H3K4me2	H4K20me1	H4K16ac	H4K12ac
Prediction accuracy	0.693	0.687	0.681	0.674	0.670	0.666	0.662	0.661	0.653	0.645
Histone modification	H3K9me1	H3K4me3	H3K36me3	H3K27me1	H2BK5me1	H3K27me3	H3K4me1	H2AK5ac	H3K9me3	H3K23ac
Prediction accuracy	0.644	0.642	0.637	0.633	0.629	0.627	0.610	0.603	0.600	0.594
Histone modification	H3K27me2	H3K36me1	H3K14ac	H3K9me2	H4K20me3	H4R3me2	H3R2me1	H3R2me2	H2BK12ac
Prediction accuracy	0.572	0.566	0.543	0.542	0.537	0.531	0.531	0.524	0.486

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ISSN: 1471-2105

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