From: iGC—an integrated analysis package of gene expression and copy number alteration
Genes | GE mean gain | GE mean loss | GE mean neutral | GE mean diff. | CNA prop. gain | CNA prop. loss | t-test | FDRa |
---|---|---|---|---|---|---|---|---|
GNPAT (G) | 0.372 | −1.048 | −0.200 | 0.601 | 0.558 | 0.015 | 3.01E-61 | 3.43E-58 |
SETDB1 (G) | 0.505 | NA | −0.056 | 0.562 | 0.556 | 0 | 4.55E-58 | 2.60E-55 |
ANGEL2 (G) | 0.588 | −0.664 | 0.032 | 0.577 | 0.549 | 0.013 | 1.30E-55 | 4.93E-53 |
GSTM1 (L) | 0.588 | −0.961 | 0.026 | −1.281 | 0.310 | 0.409 | 1.02E-33 | 5.10E-31 |
TOX (L) | −2.599 | −3.237 | −2.455 | −0.777 | 0.023 | 0.337 | 1.64E-19 | 4.10E-17 |
LYN (L) | 0.224 | −0.134 | 0.279 | −0.410 | 0.034 | 0.314 | 4.16E-19 | 6.92E-17 |