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Fig. 5 | BMC Bioinformatics

Fig. 5

From: SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information

Fig. 5

Epigenetic modifications at promoters compared with gene bodies. Using the SMITE functions, we show a comparison of the component scores (the –ln (p-value) version of the Score) and the effect direction for gene promoters and gene bodies in the T. gondii HFF data set. For DNA methylation (left), there is not a large relationship between scores and directions of scores between promoters and bodies, whereas for DNA hydroxymethylation (right) there is a concordance of loss of hydroxymethylation in promoters and gene bodies

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BMC Bioinformatics

ISSN: 1471-2105

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