Table 6 Illustrative set of terms highly enriched in BicPAMS biclusters

dlbcl

Dl1

Translation processes (including translational initiation and elongation)

Dl2

Transmembrane-related processes (including Golgi apparatus and MHC protein complex)

Dl3

Defense response; processes related with intra-cellular communication, including receptor activity

Dl4

Innate immune responses, including response to interferon-gamma

Dl5

Cellular responses to chemical stimulus, including response to cytokine stimulus

Dl6

Processes targeting the membrane-enclosed lumen associated with the cell cycle process

Dl7

Immune system processes

hughes

H1

Mitochondrion organization and translation; mitochondrial matrix

H2

Processes concerning the cell periphery and sporulation; cell wall constituent and organization

H3

Ribonucleoprotein complex biogenesis

H4

Metabolic and biosynthetic processes of cellular amino acids and carboxylic acids

H5

Metabolic processes of organonitrogen and sulfur compounds

gasch

G1

Cellular response to oxidative stress; generation of precursor metabolites and energy

G2

Processes to generate precursor metabolites and energy, including the tricarboxylic acid cycle

G3

Retrotransposon nucleocapsid; viral procapsid maturation

G4

Processes targeting the intracellular organelle lumen and nuclear lumen

G5

Nucleolus; ncRNA metabolic processes

G6

Intracellular non-membrane-bounded organelle; structural molecule activity

G7

Processes targeting the cytosolic part and, in particular, the ribosomal subunit

G8

Mitochondrion organization; mitochondrial part; biogenesis of certain protein complexes

G9

Regulation of macromolecular biosynthetic processes; protein modification

G10

Organic substance catabolic and metabolic processes (including carbohydrates)

G11

General processes associated with ribonucleoprotein complex biogenesis