Fig. 1
From: Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies
Sequence logos and intra-motif dependencies for the TFs a CJUN and b Nrf. We depict for both TFs (i) the sequence logo inferred by the PFM(2) from all species in the first row and (ii) the MI profiles of orders 1 and 2 inferred by the PFM(2) in the second row. The MI profiles of order 2 are larger than the MI profiles of order 1. Please see Additional file 3 for the MI profiles of all 35 TFs and Additional file 5 for all sequence logos of all 35 TFs for the PFMs of orders 0, 1, and 2