Fig. 2
From: Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies
Maximum and average MIs of MI profiles inferred by the PFM(2) for all 35 TFs. In Fig. a we show the maximum MI of the MI profiles of orders 1 and 2. In Fig. b we show the average MI of the MI profiles of orders 1 and 2. The dashed lines indicate the mean of the maximum MIs and the mean of the average MIs for both MI profiles respectively. The degree of intra–motif dependencies depends of the TF and is always larger in case of intra–motif dependencies of order 2. Please see Additional file 3 for the MI profiles of all 35 TFs