Skip to main content
Fig. 2 | BMC Bioinformatics

Fig. 2

From: Evaluation of logistic regression models and effect of covariates for case–control study in RNA-Seq analysis

Fig. 2

Type-I error rates from DESeq2 analysis of the permuted HD data. Type-I error rates from the DESeq2 (negative binomial model) analysis of the permuted HD data at alpha levels of 0.05 and 0.01 are presented in the figure. Each black empty dot represents the Type-I error rate of a gene. The red dots denote average values of Type-I error rates in each category of dispersion groups. The black dotted horizontal lines are our alpha levels. a shows Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.05. b displays Type-I error rates of genes having mean expression value of greater than 3 at alpha level of 0.01

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us