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Table 4 Validation precision results using ISVM and TSVM methods for the Scenarios 1 and 2

From: Transductive learning as an alternative to translation initiation site identification

Downstream

Scenario 1

Scenario 2

Window

ISVM (inductive)

TSVM(transdutivo)

ISVM (inductive)

TSVM (transdutivo)

Rattus norvegicus

 

235

79.22±2.71

81.13±5.08

69.81±4.45

72.00±2.72

518

89.00±5.51

89.33±3.03

82.33±3.05

79.52±2.72

800

90.69±4.23

89.07±3.65

94.37±3.01

84.71±2.43

1081

89.40±8.60

89.66±5.26

97.66±4.33

79.48±3.99

1365

96.00±4.95

85.00±7.59

88.00±3.71

77.58±3.45

1650

100.00±0.0

93.57±6.32

100.00±0.0

77.31±3.42

Mus musculus

 

235

88.51±2.36

87.29±0.93

83.32±1.04

84.32±0.55

518

93.41±1.45

93.37±1.46

93.17±1.10

92.45±0.66

800

98.23±0.80

97.38±0.80

97.86±0.48

93.68±0.47

1081

99.20±0.75

97.94±1.18

98.68±0.42

95.45±0.55

1365

99.35±1.19

98.70±0.97

99.57±0.20

96.16±1.20

1650

99.62±0.68

99.25±0.91

99.69±0.19

96.84±1.55

Homo sapiens

 

235

91.99±0.43

90.48±0.16

90.50±0.30

87.41±0.11

518

96.15±0.24

94.98±0.11

95.72±0,09

94.97±0.54

800

97.83±0.17

97.69±0.06

97.55±0.24

96.57±0.05

1081

98.03±0.33

97.69±0.11

97.85±0.23

97.42±0.04

1365

98.81±0.23

98.43±0.10

98.52±0.21

98.08±0.06

1650

99.04±0.31

98.76±0.13

98.63±0.22

98.39±0.06

Drosophila melanogaster

 

235

93.38±0.38

93.46±0.20

91.97±0.35

90.32±0.07

518

95.74±0.34

95.75±0.13

95.37±0.17

94.47±0.06

800

96.73±0.28

96.92±0.06

96.57±0.30

95.53±0.06

1081

96.86±0.26

96.74±0.07

96.76±0.25

96.20±0.08

1365

97.23±0.41

97.07±0.14

97.33±0.17

96.65±0.08

1650

97.71±0.27

97.93±0.12

97.64±0.27

96.57±0.16

Arabidopsis thaliana

 

235

93.10±0.22

93.73±0.26

91.39±0.16

92.77±0.06

518

97.05±0.28

97.50±0.13

96.30±0.10

97.26±0.04

800

98.16±0.20

98.58±0.13

97.84±0.05

98.46±0.04

1081

98.76±0.20

98.96±0.09

98.50±0.04

99.06±0.02

1365

99.03±0.17

99.31±0.14

98.85±0.09

99.32±0.02

1650

99.22±0.02

99.54±0.14

99.18±0.05

99.35±0.07