Table 6 Validation F-measure results using ISVM and TSVM methods for the Scenarios 1 and 2
From: Transductive learning as an alternative to translation initiation site identification
Downstream | Scenario 1 | Scenario 2 | ||
|---|---|---|---|---|
Window | ISVM (inductive) | TSVM(transdutivo) | ISVM (inductive) | TSVM (transdutivo) |
Rattus norvegicus | ||||
235 | 79.88±5.07 | 79.89±4.58 | 65.04±3.19 | 71.99±2.72 |
518 | 88.00±6.42 | 90.09±2.77 | 69.00±4.78 | 79.53±2.33 |
800 | 89.44±2.39 | 88.92±3.71 | 46.96±12.52 | 84.64±2.16 |
1081 | 84.58±10.31 | 87.51±5.46 | 25.05±12.10 | 84.64±2.87 |
1365 | 84.06±9.84 | 83.57±6.94 | 14.84±13.31 | 76.00±1.91 |
1650 | 88.95±6.52 | 94.23±6.12 | 14.43±4.36 | 77.15±2.57 |
Mus musculus | ||||
235 | 86.04±2.80 | 87.23±0.88 | 79.96±0.81 | 84.26±0.50 |
518 | 92.13±0.84 | 93.06±1.42 | 87.05±0.69 | 92.40±0.38 |
800 | 96.68±1.26 | 97.17±0.69 | 86.85±1.40 | 93.70±0.41 |
1081 | 97.40±1.09 | 97.94±1.18 | 88.06±0.90 | 95.49±0.57 |
1365 | 97.93±1.17 | 98.30±1.05 | 79.99±2.56 | 96.14±0.52 |
1650 | 98.47±1.17 | 98.78±1.16 | 78.70±2.81 | 96.76±0.68 |
Homo sapiens | ||||
235 | 90.32±0.29 | 86.49±0.13 | 90.51±0.29 | 87.42±0.11 |
518 | 95.71±0.11 | 93.43±0.13 | 95.72±0.08 | 94.83±0.32 |
800 | 97.50±0.15 | 95.87±0.08 | 97.54±0.25 | 96.57±0.06 |
1081 | 97.89±0.20 | 96.78±0.09 | 97.85±0.23 | 97.43±0.04 |
1365 | 98.56±0.18 | 97.44±0.07 | 98.52±0.21 | 98.09±0.05 |
1650 | 98.69±0.23 | 97.68±0.11 | 98.62±0.23 | 98.40±0.06 |
Drosophila melanogaster | ||||
235 | 91.81±0.38 | 89.56±0.09 | 91.97±0.34 | 90.33±0.07 |
518 | 95.36±0.21 | 93.82±0.07 | 95,38±0.17 | 94.48±0.06 |
800 | 96.56±0.17 | 94.93±0.07 | 96.57±0.30 | 95.54±0.06 |
1081 | 96.83±0.24 | 95.77±0.08 | 96.76±0.25 | 96.21±0.08 |
1365 | 97.30±0.31 | 96.22±0.09 | 97.32±0.17 | 96.66±0.07 |
1650 | 97.52±0.16 | 96.14±0.13 | 97.67±0.28 | 96.57±0.14 |
Arabidopsis thaliana | ||||
235 | 93.91±0.18 | 93.73±0.27 | 92.73±0.04 | 92.76±0,05 |
518 | 97.59±0.16 | 97.50±0.13 | 97.01±0.05 | 97.25±0.04 |
800 | 98.70±0,11 | 98.57±0.13 | 98.42±0.02 | 98.45±0.04 |
1081 | 99.06±0.14 | 98.95±0.09 | 98.86±0.03 | 99.05±0.02 |
1365 | 99.25±0.10 | 99.30±0.14 | 99.14±0.04 | 99.31±0.02 |
1650 | 99.44±0.16 | 99.50±0.17 | 99.30±0.05 | 99.35±0.04 |