Novel methods to optimize gene and statistic test for evaluation – an application for Escherichia coli

BMC Bioinformatics

Table 6 Result of optization for gene coding for prochymosin and comparison with experimental result from Menzella’s study

Method	CAI	GC	Patterns matching
Menzella	0.72	0.49	6 nucleotides	7 nucleotides	8 nucleotides	9 nucleotides	Total
Jcat	0.96	0.50	177	69	22	12	280
Eugene	0.94	0.50	48	20	6	2	76
HEGP	0.81	0.51	173	55	15	6	249
DHEG	0.73	0.50	216	61	13	1	291
NN	0.47	0.49	185	57	20	7	269
NNP	0.67	0.50	204	68	26	13	311
NND	0.64	0.50	198	63	17	4	282
Linear	0.52	0.52	185	64	13	2	264

ISSN: 1471-2105