SNVs | Indels | |||||
---|---|---|---|---|---|---|
TV mean ± sd | FV mean ± sd | p-value | TV mean ± sd | FV mean ± sd | p-value | |
BQRS | 0.11 ± 0.03 | -0.6 ± 0.5 | <0.0001 | 0.28 ± 0.12 | 0.15 ± 0.05 | <0.0001 |
RPRS | -0.067 ± 0.05 | 0.05 ± 0.4 | 0.0009 | -0.74 ± 0.22 | 0.23 ± 0.05 | <0.0001 |
CRS | 0.0007 ± 0.02 | -0.009 ± 0.29 | 0.72 | 0.001 ± 0.07 | 0.007 ± 0.03 | 0.6 |
DP | 96.61 ± 0.58 | 49.25 ± 5.06 | <0.0001 | 109.4 ± 9.57 | 96.01 ± 0.1 | <0.0001 |
MQ | 60 ± 0 | 59.99 ± 0.07 | - | 60 ± 0 | 60 ± 0 | - |
MQRS | -0.03 ± 0.02 | -0.05 ± 0.28 | 0.3 | -0.02 ± 0.09 | -0.21 ± 0.04 | <0.0001 |
GQ | 99 ± 0 | 79.15 ± 12.06 | - | 99 ± 0 | 73.16 ± 2.7 | - |