Fig. 2

Comparison of SFREEMAP and make.simmap estimates. make.simmap estimates were obtained for stochastic mappings from a range of replicates, from 100 to 2500. Boxes correspond to standard deviations, dashes to means, whiskers to the min-max ranges and dots to outliers. a) Dwelling times, i.e. the fraction of the tree expected to have been “spent” on a given state, represented as percentages of tree length. b) Absolute numbers of transitions summed across tree branches