Table 4 Signatures detected in top 20 ranked features (Mouse)

1

IG

TxNex

phm, phmn,

ACA, ACG,

KOZAK

0.47 (0.92)

phmx,

CCG, CG,

py60m,

CGA, CGC,

py60mx

CGG, CGT,

FickScore, GC,

GCG, TAA,

TCG

2

GR

phm, phmn,

ACA, AGA,

DNA.hAT.Charlie,

0.40 (0.91)

phmx,

AT, CA, CAA,

LINE.RTE.BovB,

py60m,

CAT, CG, TGA

LINE.RTE.X,

py60mx

LTR.ERVL.MaLR,

SINE.ID,

SINE.MIR,

SINE.tRNA

3

RFS

TxExLenAvg,

phm, phmn,

AA, FickScore

KOZAK,

LINE.L1,

0.44 (0.92)

TxLen,

phmx,

OrfProp

LTR.ERV1,

TxNex

py60m,

LTR.ERVK,

py60mx

LTR.ERVL,

LTR.ERVL.MaLR,

SINE.Alu,

SINE.B2, SINE.B4

4

GFS, LR,

TxExLenAvg,

phm, phmn,

AAC, AAG,

KOZAK

0.51 (0.93)

EN

TxLen,

phmx,

AC, ACA, ACT,

TxNex

py60m,

AGT, CAC,

py60mx

CAG, CAT,

CGT, CTT,

FickScore,

GAT, GT,

GTA, GTC,

GTG, TAA,

TAC, TAT

5

RF,

TxExLenAvg,

phm, phmn,

AA, AC,

KOZAK

0.51 (0.93)

EFmn

TxLen,

phmx,

ACA, AGA,

TxNex

py60m,

CAC, CAT,

py60mx

CCG, CG,

CGC, CGG,

FickScore, GC,

GGC, GT,

TAA, TAT, TT

6

WT

TxExLenAvg,

AAC, AAG,

0.46 (0.92)

TxNex

AAT, AC,

ACA, ACC,

ACG, ACT,

AGA, AGC,

AT, CA, CG,

CT, GT, TA,

TC, TG