Table 6 Performance of tested tools (average Precision/Recall/Accuracy with 95% CI)
From: Identification of long non-coding transcripts with feature selection: a comparative study
Coding/non-coding tools | SVM | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
CPAT | CPC | PLEK | iSeeRNA | All features | Signature 1 | Signature 2 | Signature 3 | Signature 4 | Signature 5 | Signature 6 | |
human | |||||||||||
Precision | 0.71 (± 0.02) | 0.81 (± 0.02) | 0.67 (± 0.01) | 0.97 (± 0.01) | 0.97 (± 0.01) | 0.97 (± 0.01) | 0.97 (± 0.01) | 0.96 (± 0.01) | 0.97 (± 0.01) | 0.98 (± 0.02) | − |
Recall | 0.96 (± 0.01) | 0.66 (± 0.03) | 0.98 (± 0.01) | 0.91 (± 0.02) | 0.93 (± 0.01) | 0.94 (± 0.02) | 0.91 (± 0.02) | 0.94 (± 0.01) | 0.93 (± 0.01) | 0.82 (± 0.04) | − |
Accuracy | 0.78 (± 0.01) | 0.75 (± 0.02) | 0.74 (± 0.01) | 0.94 (± 0.01) | 0.95 (± 0.01) | 0.95 (± 0.01) | 0.94 (± 0.01) | 0.95 (± 0.01) | 0.95 (± 0.01) | 0.90 (± 0.02) | − |
mouse | |||||||||||
Precision | 0.73 (± 0.01) | 0.84 (± 0.02) | 0.66 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) | 0.99 (± 0.01) |
Recall | 0.96 (± 0.01) | 0.77 (± 0.02) | 0.91 (± 0.02) | 0.87 (± 0.02) | 0.91 (± 0.02) | 0.90 (± 0.01) | 0.88 (± 0.02) | 0.90 (± 0.02) | 0.91 (± 0.02) | 0.91 (± 0.01) | 0.82 (± 0.07) |
Accuracy | 0.81 (± 0.01) | 0.81 (± 0.01) | 0.71 (± 0.02) | 0.93 (± 0.01) | 0.95 (± 0.02) | 0.94 (± 0.01) | 0.94 (± 0.01) | 0.94 (± 0.01) | 0.95 (± 0.01) | 0.95 (± 0.01) | 0.90 (± 0.04) |
zebrafish | |||||||||||
Precision | 0.83 (± 0.01) | 0.85 (± 0.01) | 0.72 (± 0.01) | 1.00 (± 0.01) | 1.00 (± 0.01) | 1.00 (± 0.01) | 1.00 (± 0.00) | 1.00 (± 0.00) | 1.00 (± 0.01) | − | − |
Recall | 0.86 (± 0.03) | 0.74 (± 0.03) | 0.82 (± 0.04) | 0.86 (± 0.03) | 0.91 (± 0.01) | 0.91 (± 0.02) | 0.90 (± 0.02) | 0.96 (± 0.02) | 0.80 (± 0.06) | − | − |
Accuracy | 0.84 (± 0.02) | 0.81 (± 0.02) | 0.74 (± 0.02) | 0.89 (± 0.02) | 0.94 (± 0.01) | 0.93 (± 0.01) | 0.93 (± 0.01) | 0.97 (± 0.02) | 0.85 (± 0.04) | − | − |