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Table 6 Performance of tested tools (average Precision/Recall/Accuracy with 95% CI)

From: Identification of long non-coding transcripts with feature selection: a comparative study

  Coding/non-coding tools    SVM  
  CPAT CPC PLEK iSeeRNA All features Signature 1 Signature 2 Signature 3 Signature 4 Signature 5 Signature 6
human  
Precision 0.71 (± 0.02) 0.81 (± 0.02) 0.67 (± 0.01) 0.97 (± 0.01) 0.97 (± 0.01) 0.97 (± 0.01) 0.97 (± 0.01) 0.96 (± 0.01) 0.97 (± 0.01) 0.98 (± 0.02)
Recall 0.96 (± 0.01) 0.66 (± 0.03) 0.98 (± 0.01) 0.91 (± 0.02) 0.93 (± 0.01) 0.94 (± 0.02) 0.91 (± 0.02) 0.94 (± 0.01) 0.93 (± 0.01) 0.82 (± 0.04)
Accuracy 0.78 (± 0.01) 0.75 (± 0.02) 0.74 (± 0.01) 0.94 (± 0.01) 0.95 (± 0.01) 0.95 (± 0.01) 0.94 (± 0.01) 0.95 (± 0.01) 0.95 (± 0.01) 0.90 (± 0.02)
mouse  
Precision 0.73 (± 0.01) 0.84 (± 0.02) 0.66 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01) 0.99 (± 0.01)
Recall 0.96 (± 0.01) 0.77 (± 0.02) 0.91 (± 0.02) 0.87 (± 0.02) 0.91 (± 0.02) 0.90 (± 0.01) 0.88 (± 0.02) 0.90 (± 0.02) 0.91 (± 0.02) 0.91 (± 0.01) 0.82 (± 0.07)
Accuracy 0.81 (± 0.01) 0.81 (± 0.01) 0.71 (± 0.02) 0.93 (± 0.01) 0.95 (± 0.02) 0.94 (± 0.01) 0.94 (± 0.01) 0.94 (± 0.01) 0.95 (± 0.01) 0.95 (± 0.01) 0.90 (± 0.04)
zebrafish  
Precision 0.83 (± 0.01) 0.85 (± 0.01) 0.72 (± 0.01) 1.00 (± 0.01) 1.00 (± 0.01) 1.00 (± 0.01) 1.00 (± 0.00) 1.00 (± 0.00) 1.00 (± 0.01)
Recall 0.86 (± 0.03) 0.74 (± 0.03) 0.82 (± 0.04) 0.86 (± 0.03) 0.91 (± 0.01) 0.91 (± 0.02) 0.90 (± 0.02) 0.96 (± 0.02) 0.80 (± 0.06)
Accuracy 0.84 (± 0.02) 0.81 (± 0.02) 0.74 (± 0.02) 0.89 (± 0.02) 0.94 (± 0.01) 0.93 (± 0.01) 0.93 (± 0.01) 0.97 (± 0.02) 0.85 (± 0.04)