Table 1 List of TFs inferred by the linear model to play a regulatory role during cold stress with significant p-values (<1e-03)
TF family | TFs | Symbol | Description | References | p-value |
|---|---|---|---|---|---|
AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | Ta.27144.1.S1_A_at | RAP2.12 | RAP2.12, RELATED TO AP2 12 | New, [60] | 5.0e-09 |
TaAffx.122374.1.A1_at | CBFIVa-A2 | Cluster: CBFIVa-A2; n = 1; Triticum aestivum | 1.0e-12 | ||
TaAFFX.98930.1.A1_at | CBFIIId-12 | DREB1A, CBF3, ATCBF3 | dehydration response element B1A | 1.0e-12 | ||
Ta.22822.1.S1_X_at | RAP2.3 | RAP2.3, ATEBP, ERF72, EBP | ethylene-responsive element | New, [60] | 1.0e-12 | |
TaAFFX.1024.1.A1_at | CBFIIId-B19 | DREB1A, CBF3, ATCBF3 | dehydration response element B1A | 1.0e-12 | ||
Ta.2781.1.S1_at | CBF1 | AP2/EREBP type transcription factor; n = 1 | 1.0e-12 | ||
Ta.25843.1.A1_at | CBF2 | C repeat-binding factor 2 | 1.0e-12 | ||
Ta.13471.1.S1_at | CBFII-5.2 | Dehy-responsive element-binding protein 1C | 5.0e-08 | ||
TaAffx.15675.1.A1_at | TmCBF7 | TmCBF7; n = 1; Triticum monococcum | [24] | 5.0e-08 | |
TaAffx.114399.1.S1_s_at | CBFIIIc-B10 | CRT/DRE binding factor 10 | 5.0e-08 | ||
TaAffx.86939.1.S1_at | HvCBF7 | HvCBF7; n = 1; TINY2; encodes a member of the DREB subfamily | [24] | 1.0e-03 | |
Ta.350.1.A1_s_at | TaCBF6 | Cluster: TaCBF6; n = 1; Triticum aestivum | [24] | 5.0e-08 | |
TaAffx.43752.1.A1_at | CBFIIIc-D3 | Cluster: CBFIIIc-D3; n = 1; Triticum aestivum | 5.0e-08 | ||
TaAffx.28024.1.S1_at | CBFIVd-B9 | Dehy-responsive element-binding protein 1B | 1.0e-03 | ||
Ta.5304.1.S1_at | RAP2.1 | AP2 domain containing protein RAP2.1 | [6] | 1.0e-03 | |
TaAffx.23008.1.S1_at | RAP2.6 | related to AP2 6 l | [6] | 1.0e-03 | |
bHLH,Basic Helix-Loop-Helix family | TaAFFX.18844.1.S1_at | ICE1 | inducer of CBF expression 1 | 1.0e-12 | |
TaAffx.12752.1.S1_s_at | ICE2 | SCRM2, ICE2 | basic helix-loop-helix (bHLH) | 6.3e-08 | ||
TaAffx.12752.1.S1_at | ICE2 | inducer of CBF expression 2 | 6.3e-08 | ||
HB,Homeobox TF | Ta.6874.1.A1_at | HOS3 | HOS3 protein | [66] | 1.6e-10 |
CCAAT box binding factor | TA.27414.1.S1_AT | NF-YA6 | NF-YA6 | nuclear factor Y, subunit A6 | New | 1.0e-03 |
TA.1817.1.S1_AT | NF-YA5 | NFYA5, NF-YA5 | nuclear factor Y, subunit A5 | New | 1.0e-03 | |
MYB domain transcription factor family | TA.5251.1.A1_AT | MYBAS1 | Myb-related protein MYBAS1 | New | 1.0e-03 |
TA.26049.1.S1_A_AT | MYB1/MYB4 | Transcription factor Myb1 | [55] | 1.0e-03 | |
TA.5405.1.S1_X_AT | MYB15 | MYB15 | myb domain protein 15 | 3.9e-04 | ||
MYB-related transcription factor family | TA.25744.1.S1_AT | EPR1 | EPR1, RVE7 | Homeodomain-like superfamily | New | 7.9e-07 |
TA.7524.1.A1_AT | LHY | LHY | Homeodomain-like superfamily protein | New | 1.0e-03 | |
TA.8661.1.S1_AT | MCB2 | MCB2 protein | New | 1.0e-03 | |
WRKY domain transcription factor family | TA.16082.1.A1_A_AT | WRKY1 | WRKY transcription factor; n = 1 | ||
TA.16082.1.A1_AT | 1.0e-03 | ||||
TA.4678.2.S1_AT | WRKY1 | WRKY transcription factor; n = 1 | 1.0e-03 | ||
TAAFFX.64818.1.S1_AT | WRKY48 | WRKY48 | WRKY DNA-binding protein 48 | 1.0e-03 | ||
Pseudo Regulatory Response (PRR ) | TA.13464.1.S1_S_AT | PRR1 | Two-component response regulator-like PRR1 | 1.0e-03 | |
TA.29499.1.A1_AT | PRR1 | Two-component response regulator-like PRR1 | 1.0e-03 | ||
Regulatory response (RR) | Ta.10408.1.S1_at | RR6 | Cluster response regulator 6 | [52] | 7.9e-07 |
Ta.11777.1.S1_X_at | RR2 | Cluster: ZmRR2 protein | [52] | 7.9e-07 | |
Chromatin Remodeling | TA.16121.2.S1_AT | SWI/SNF | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin | New | 1.5e-11 |
AS2 | Ta.7384.2.S1_A_at | DUF260 | Seed specific protein Bn15D17A, DUF260 | [6] | 1.0e-03 |
TaAFFX.3993.1.S1_at | DUF260 | Cluster: Predicted protein; n = 1, DUF260 | [6] | 1.0e-03 | |
C2H2 zinc finger family | TA.103.1.S1_AT | ZAT10 | Cluster: Zinc finger protein 1; n = 1 | [6] | 6.3e-08 |
TA.29449.1.S1_S_AT | ZOS3 | Cluster: Zinc finger protein 1; n = 1 | 6.3e-08 | ||
TaAffx.130052.1.S1_at | ZAT12 | Cluster: C2H2 zinc finger protein; n = 1 | 1.0e-03 | ||
TAAFFX.98004.1.S1_AT | A20/AN1-like | A20/AN1-like zinc finger family proteinSTRESS ASSOCIATED P1 | [66] | 1.0e-03 | |
Ta.6076.1.S1_at | ESK1 | ESK1, TBL29 | Plant protein of unknown function (DUF828) | 1.0e-12 | ||
Ta.7191.1.A1_at | ELO2 | ELO2, ABO1 | IKI3 family protein | [66] | 1.6e-10 | |
Ta.26723.1.A1_at | SIZ1 | ATSIZ1/SIZ1, putative, expressed | [6] | 1.0e-03 | |
Ta.13279.1.S1_a_at | EIN3 | EIN3-binding F box protein 1 | [52] | 1.0e-03 | |
TaAffx.36731.1.S1_at | EIN4 | Protein EIN4 n = 1 Tax = Arabidopsis thaliana | [52] | 1.0e-03 | |
TaAffx.32271.2.S1_at | LOS2 | Enolase; n = 1; Oryza sativa Indica Group | [6] | 1.0e-03 | |
Ta.26244.1.S1_at | MSL5 | mechanosensitive channel of small conductance-like 5 | New | 7.9e-07 | |
Ta.7091.1.S1_at | P5CS2 | P5CS2 | delta 1-pyrroline-5-carboxylate synthase 2 | 1.0e-03 |