Method | MDR | AntEpiSeeker | BOOST | MegaSNPHunter | KNN-MDR |
---|
Power | N/A | 0.65 | 0.67 | 0.80 | 0.74 |
Corrected power | N/A | 0.15 | 0.28 | 0.12 | 0.63 |
- Tables 1 and 2 shows the results of 100 simulations. For KNN-MDR, the number of neighbors is set to 10, and the 1000 markers are split into 100 windows of 10 consecutive markers. All possible sets of up to 2 windows for Table 1 (5050 sets) and up to 3 windows for Table 2 (166750 sets) have been tested. Parameters for the other methods were set to default values. Due to the very large number of tests required when 3 markers are involved, MDR results have not been obtained in Table 2. Data sets used to generate these 2 tables are provided as Additional files 2 and 3