From: A machine learning approach for viral genome classification
 |  |  | COMET | REGA | CASTOR | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
 |  | # of instances | TPR | FPR | F-measure | TPR | FPR | F-measure | TPR | FPR | F-measure |
CRFs | HIV1_01_AE | 1000 | 0.989 | 0.000 | 0.993 | 0.007 | 0.000 | 0.014 | 0.956 | 0.001 | 0.975 |
 | HIV1_02_AG | 1000 | 0.952 | 0.002 | 0.967 | 0.000 | 0.000 | 0.000 | 0.853 | 0.005 | 0.897 |
 | HIV1_06_cpx | 698 | 0.924 | 0.000 | 0.958 | 0.938 | 0.000 | 0.965 | 0.927 | 0.003 | 0.943 |
 | HIV1_07_BC | 1000 | 0.977 | 0.000 | 0.988 | 0.988 | 0.000 | 0.993 | 0.982 | 0.002 | 0.980 |
 | HIV1_08_BC | 399 | 0.965 | 0.000 | 0.981 | 0.990 | 0.000 | 0.994 | 0.972 | 0.001 | 0.970 |
 | HIV1_11_cpx | 58 | 0.828 | 0.000 | 0.906 | 0.690 | 0.000 | 0.816 | 0.897 | 0.006 | 0.588 |
 | HIV1_12_BF | 222 | 0.860 | 0.000 | 0.925 | 0.374 | 0.000 | 0.544 | 0.932 | 0.008 | 0.807 |
 | Mean |  | 0.928 | 0.000 | 0.960 | 0.570 | 0.000 | 0.618 | 0.931 | 0.004 | 0.880 |
Pure subtypes | HIV1_A | 1000 | 0.966 | 0.001 | 0.980 | 0.968 | 0.106 | 0.654 | 0.891 | 0.006 | 0.917 |
 | HIV1_B | 1000 | 0.995 | 0.001 | 0.993 | 0.945 | 0.000 | 0.970 | 0.817 | 0.007 | 0.866 |
 | HIV1_C | 1000 | 0.990 | 0.001 | 0.991 | 0.997 | 0.000 | 0.997 | 0.912 | 0.003 | 0.942 |
 | HIV1_D | 1000 | 0.938 | 0.000 | 0.968 | 0.911 | 0.000 | 0.953 | 0.892 | 0.010 | 0.899 |
 | HIV1_F | 1000 | 0.927 | 0.000 | 0.962 | 0.970 | 0.000 | 0.985 | 0.914 | 0.003 | 0.940 |
 | HIV1_G | 1000 | 0.915 | 0.001 | 0.952 | 0.929 | 0.007 | 0.931 | 0.778 | 0.003 | 0.860 |
 | Mean |  | 0.955 | 0.001 | 0.974 | 0.953 | 0.019 | 0.915 | 0.867 | 0.005 | 0.904 |