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Table 2 Sample details

From: AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data

Sample

Species

Location

Sex

Coverage

Study

PB7

U. maritimus

Spitsbergen, Svalbard

F

176.2X

Miller et al. 2012 [18]

PB12

U. maritimus

Qaanaq, Greenland

F

26.0X

Liu et al. 2014 [17]

PB68

U. maritimus

Qaanaq, Greenland

F

26.1X

Liu et al. 2014 [17]

PB105

U. maritimus

Disko West, Greenland

F

26.2X

Liu et al. 2014 [17]

OFS01

U. arctos

Östanvik, Sweden

F

22.8X

Liu et al. 2014 [17]

RF01

U. arctos

Ruokolahti, Finland

F

20.9X

Liu et al. 2014 [17]

SJS01

U. arctos

Slakka, Sweden

F

15.2X

Liu et al. 2014 [17]

Swe

U. arctos

Dalarna, Sweden

F

11.0X

Cahill et al. 2015 [11]

Den

U. arctos

Denali Natl. Park, AK

F

12.1X

Cahill et al. 2013 [10]

GP01

U. arctos

Glacier Park, Montana

M

16.8X

Liu et al. 2014 [17]

GRZ

U. arctos

Kenai Peninsula, AK

F

83.6X

Miller et al. 2012 [18]

ABC01

U. arctos

Baranof Island, AK

M

20.0X

Liu et al. 2014 [17]

ABC02

U. arctos

Baranof Island, AK

F

18.4X

Liu et al. 2014 [17]

ABC03

U. arctos

Chichagof Island, AK

M

19.6X

Liu et al. 2014 [17]

ABC04

U. arctos

Chichagof Island, AK

M

18.8X

Liu et al. 2014 [17]

ABC05

U. arctos

Chichagof Island, AK

F

22.4X

Liu et al. 2014 [17]

ABC06

U. arctos

Admiralty Island, AK

F

19.5X

Liu et al. 2014 [17]

Adm1

U. arctos

Admiralty Island, AK

F

12.1X

Cahill et al. 2013 [10]

Adm2

U. arctos

Admirality Island, AK

F

76.5X

Miller et al. 2012 [18]

Bar

U. arctos

Baranof Island, AK

M

49.1X

Miller et al. 2012 [18]

Chi1

U. arctos

Chichagof Island, AK

F

9.2X

Cahill et al. 2015 [11]

Chi2

U. arctos

Chichagof Island, AK

F

10.2X

Cahill et al. 2015 [11]

Uam

U. americanus

Pennsylvania

M

11.6X

Cahill et al. 2013 [10]

  1. All sequence data were published in previous studies and downloaded as reads from the NCBI SRA. Coverage levels shown were estimated from numbers of raw reads before mapping to the reference genome. All samples were aligned to the polar bear reference genome, then subjected to base and map quality filtering, indel realignment, and duplicate removal