Skip to main content

Table 3 Results of running AD-LIBS on autosomal sequences of five randomly chosen European (CEU) individuals from the 1000 Genomes Project, with the Altai Neanderthal and five randomly chosen Yoruba (YRI) individuals from the 1000 Genomes Project as reference individuals from admixing populations

From: AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data

Individual

AD-LIBS, 10 kb

AD-LIBS, 15 kb

\( \widehat{f} \)

NA11832

11.5%

2.35%

1.41%

NA11840

11.5%

2.32%

1.52%

NA12340

13.8%

3.42%

1.52%

NA12383

13.4%

3.39%

1.56%

NA12814

13.6%

3.29%

1.45%

  1. Using AD-LIBS with a window size (10 kb) lower than the recommended minimum of 14 kb gives bad results, while using a window size above this threshold (15 kb) gives much more reasonable results
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us