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Table 1 Organization of the current reference set of pathways in NFPscanner. We compiled 766 entries from 7 pathway databases — KEGG, Reactome, NCI, Biocarta, Spike, HumanCyc and PANTHER — into 49 biomedically relevant categories of basic networks, which are listed in the NFPscanner reference sets

From: NFPscanner: a webtool for knowledge-based deciphering of biomedical networks

  Source database  
Category KEGG Reactome NCI/PID SPIKE HumanCyc PANTHER BioCarta Total
Genetic Information Processing 7 22 40    5 19 93
Environmental Information Processing 27 6     16 29 78
Cellular Processes 13 23 9    25 46 116
Organismal Systems 61 14     26 28 129
Metabolism   12       12
Signal Transduction   23    1   83 107
Transport Processes   8       8
Biosynthesis      20    20
Degradation      10    10
Modification      15    15
Brain    11      11
Cell Adhesion    31      31
Cytokine and Chemokine    25      25
Development    7      7
Growth Factor    22      22
Hormone    16      16
Immmune Response    11      11
Kinase and Phosphatase    12      12
Ras Superfamily    11      11
Second Messengers    8      8
Transcription Factor    27      27
Cell Cycle     9     9
DNA Damage Response     8     8
Hearing Related Pathways     5     5
Programmed Cell Death     6     6
Total 108 108 199 28 46 72 205 766