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Table 3 Influences of explanatory variables on pathogen/non-pathogen classification when removing the effects of phylogenetic signals

From: Limitations of a metabolic network-based reverse ecology method for inferring host–pathogen interactions

Variables

Mammalian pathogens

Plant pathogens

Insect pathogens

Estimate[Averaged]

Estimate[Best]

Estimate[Averaged]

Estimate[Best]

Estimate[Averaged]

Estimate[Best]

BSSHM

0.558 (0.31)

0.448 (0.15)

−0.08 (0.92)

 

0.531 (0.67)

 

BSSMH

−0.531 (0.40)

 

−0.164 (0.86)

 

−1.309 (0.37)

−1.494 (0.12)

MCIHM

−0.126 (0.83)

 

−0.826 (0.37)

 

0.346 (0.76)

 

MCIMH

−0.269 (0.44)

 

0.592 (0.31)

 

1.159 (0.17)

1.53 (0.03)

Genome size

−0.805 (0.25)

−0.644 (0.04)

0.767 (0.61)

 

−0.973 (0.45)

 

#Genes

0.005 (1.00)

 

−0.642 (0.71)

 

−0.049 (0.98)

 

Oxygen

−0.486 (0.23)

−0.483 (0.20)

−5.029 (0.99)

 

−3.849 (0.99)

−2.864 (0.04)

N

0.309 (0.81)

 

−0.078 (0.96)

1.085 (0.02)

−5.549 (0.03)

−4.766 (0.01)

E

1.023 (0.17)

0.865 (0.04)

1.398 (0.32)

 

5.288 (0.03)

4.711 (<0.01)

Q

−0.047 (0.73)

 

0.274 (0.33)

 

−0.547 (0.14)

−0.539 (0.12)

AICc

 

199.6

 

68.4

 

91.2

  1. See the footnotes to Tables 1 and 2 for descriptions of table elements. Estimates in the best and averaged models based on phylogenetic logistic regression are shown