Table 3 The matrix test sets assessed in the MSA construction evaluation
From: PFASUM: a substitution matrix from Pfam structural alignments
Test set | Algorithm | Matrix numbers |
|---|---|---|
PFASUM MSA Matrices | PFASUM | 31,43,60 |
Standard MSA Matrices | BLOSUM | 50,62 |
| Â | PAM | 250 |
| Â | VTML | 160,200 |