Table 3 Computing TP, FP and FN for Segment-Based comparison
From: An evaluation of copy number variation detection tools for cancer using whole exome sequencing data
Amplification | BenchSeg CNVÂ >Â thr | BenchSeg CNVÂ <Â thr |
TestSeg CNVÂ >Â thr | TP if they have overlap >80% of TestSeg | FP if they have overlap >80% of TestSeg |
TestSeg CNV < thr | FN if they have overlap >80% of TestSeg | … |
Deletion | BenchSeg CNV < − thr | BenchSeg CNV > −thr |
TestSeg CNV < −thr | TP if they have overlap >80% of TestSeg | FN if they have overlap >80% of TestSeg |
TestSeg CNV > −thr | FN if they have overlap >80% of TestSeg | ... |