Table 3 Total count of predicted orthologs and distribution of predicted orthologs at each e-value rank under different conditions of ortholog prediction
From: OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement
Fly | Plant | Actino | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ReD_s.aln | ReD_f.aln | OID | ODB | ReD_AB | ReD_SW | ReD_n5 | ReD_n6 | ReD_n7 | ReD_n8 | ReD_n9 | ReD_n10 | OID | ReD_n4 | |
Total count | 156,223 | 157,105 | 142,437 | 219,715 | 489,574 | 424,334 | 514,093 | 519,680 | 524,341 | 531,003 | 534,538 | 537,454 | 295,966 | 169,860 |
1 | 94.0% | 94.0% | 95.4% | 79.3% | 76.6% | 69.6% | 75.8% | 74.5% | 73.4% | 72.7% | 72.2% | 71.6% | 66.6% | 92.8% |
2 | 3.9% | 3.9% | 2.7% | 7.2% | 10.7% | 14.5% | 10.7% | 10.5% | 10.3% | 10.1% | 10.0% | 9.9% | 8.7% | 5.1% |
3 | 1.3% | 1.3% | 0.7% | 3.4% | 6.3% | 7.8% | 6.4% | 6.2% | 6.0% | 5.9% | 5.8% | 5.8% | 4.6% | 1.4% |
4 | 0.8% | 0.8% | 0.3% | 1.9% | 3.9% | 4.9% | 4.2% | 4.0% | 3.9% | 3.8% | 3.7% | 3.7% | 2.8% | 0.7% |
5 | 0.0% | 0.0% | 0.2% | 1.3% | 2.5% | 3.3% | 2.9% | 2.8% | 2.7% | 2.6% | 2.5% | 2.5% | 1.8% | 0.0% |
6 | 0.0% | 0.0% | 0.1% | 0.9% | 0.0% | 0.0% | 0.0% | 2.1% | 2.0% | 1.9% | 1.9% | 1.9% | 1.3% | 0.0% |
7 | 0.0% | 0.0% | 0.1% | 0.8% | 0.0% | 0.0% | 0.0% | 0.0% | 1.6% | 1.6% | 1.6% | 1.5% | 1.0% | 0.0% |
8 | 0.0% | 0.0% | 0.1% | 0.6% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 1.3% | 1.3% | 1.2% | 0.8% | 0.0% |
9 | 0.0% | 0.0% | 0.1% | 0.5% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 1.0% | 1.0% | 0.7% | 0.0% |
10 | 0.0% | 0.0% | 0.1% | 0.4% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.9% | 0.6% | 0.0% |
11+ | 0.0% | 0.0% | 0.4% | 3.6% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 0.0% | 11.0% | 0.0% |