Table 2 The performance comparison between PVAAS and ISVASE
From: ISVASE: identification of sequence variant associated with splicing event using RNA-seq data
Data | Method | Precision | Consistency |
|---|---|---|---|
PVAAS test data | PVAAS | 0.00(0/8) | - |
ISVASE(novel) | 0.50(7/14) | - | |
ISVASE(all) | 0.75(129/172) | - | |
Control1(SRR388226) | PVAAS | 0.20(12/61) | 0.46(28/61) |
ISVASE(novel) | 0.40(54/134) | 0.65(87/134) | |
ISVASE(all) | 0.83(2138/2577) | 0.82(2105/2577) | |
Control1(SRR388227) | PVAAS | 0.14(9/63) | 0.44(28/63) |
ISVASE(novel) | 0.42(50/120) | 0.73(87/120) | |
ISVASE(all) | 0.83(2130/2557) | 0.82(2105/2557) | |
PVAAS | 0.07(2/28) | - | |
Control(common) | ISVASE(novel) | 0.41(36/87) | - |
ISVASE(all) | 0.85(1788/2105) | - | |
Knockdown1(SRR388228) | PVAAS | 0.19(18/93) | 0.33(31/93) |
ISVASE(novel) | 0.44(83/187) | 0.64(119/187) | |
ISVASE(all) | 0.83(2250/2710) | 0.85(2298/2710) | |
Knockdown2(SRR388229) | PVAAS | 0.27(24/89) | 0.35(31/89) |
ISVASE(novel) | 0.43(73/168) | 0.71(119/168) | |
ISVASE(all) | 0.83(2293/2760) | 0.83(2298/2760) | |
Knockdown(common) | PVAAS | 0.26(8/31) | - |
ISVASE(novel) | 0.46(55/119) | - | |
ISVASE(all) | 0.85(1951/2298) | - |