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Table 4 Enriched Glioblastoma-related pathways for the genes in first PC by different sPCA methods

From: Incorporating biological information in sparse principal component analysis with application to genomic data

Pathway ID

Pathway name

P-value

Gene

   

From input

In annotation

Fused sPCA

 739007

Spinal cord injury

7.43E-18

45

112

 782000

Proteoglycans in cancer

5.77E-11

55

225

 523016

Transcriptional misregulation in cancer

3.31E-7

40

179

 83105

Pathways in cancer

3.36E-7

61

327

 83115

Bladder cancer

6.10E-6

14

38

Grouped sPCA

 739007

Spinal Cord Injury

1.97E-14

36

112

 523016

Transcriptional misregulation in cancer

4.06E-7

34

179

 83105

Pathways in cancer

2.58E-5

46

327

 P00005

Angiogenesis

4.90E-5

26

150

SPC

 739007

Spinal Cord Injury

1.43E-5

5

112

SPCA

 739007

Spinal Cord Injury

6.46E-5

8

112