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Table 2 Feature comparison with similar web-tools

From: Variant Ranker: a web-tool to rank genomic data according to functional significance

  

VariantRanker

eXtasy

wANNOVAR

PhenIX

wKGGSeq

Features

Input VCF files

x

x

x

x

x

 

Input list of variants

x

-

x

-

x

 

Pedigree input

-

-

-

-

x

 

Phenotype terms (HPO/OMIM)

-

x

x

x

x

 

Result download

x

x

x

-

-

 

Excel import

x

x

x

-

-

 

Genome browser visualisation

x

-

-

x

x

 

Result web storage (shareable links)

x

-

x

-

x

Annotations

Gene information

x

x

x

x

x

 

Population frequency

x

-

x

x

x

 

Deleteriousness prediction

x

x

x

x

x

 

Conservation scores

x

x

x

-

x

 

Clinical associations

x

-

x

x

x

Analysis

Variant prioritisation

x

x

x

x

x

 

Variant ranking

x

x

-

x

x

 

Coding variants

x

x

x

x

x

 

Non-coding variants

x

-

x

x

x

 

Gene Ranking

x

-

x

x

-

 

Functional enrichment analysis

x

-

-

-

-

 

Graphical representation

x

-

x

-

x

Filtering

Genotype filtering (Case Control)

x

-

-

-

x

 

Variant attributes filtering

x

-

x

-

x

 

Inheritance model

x

-

x

x

x

 

Mutation count/gene

x

-

-

-

x