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Table 3 List of events (meningioma and HIV data set) respectively number of events (glioblastoma data set) that were chosen by our variable selection methods using the thresholds from the simulation study (x = event was selected)

From: Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV

Method

freq

brod

cor

fisher

z

weight

weight

OT

single

lcliq

lcliq

mcliq

mcliq

threshold

0.2

-

0.3

0.01

0.9

0.05

0.3

0.25

-

0.05

0.2

0.05

0.15

MENINGIOMA data set

Chr14-

  

x

x

x

x

x

x

x

x

 

x

 

Chr22-

x

x

x

x

x

  

x

x

x

 

x

 

Chr1p-

  

x

x

x

x

x

x

x

x

   

Chr6-

  

x

x

x

 

x

x

x

    

Chr10-

  

x

x

x

x

x

 

x

    

Chr18-

  

x

x

x

 

x

x

x

    

Chr19-

  

x

x

x

 

x

 

x

    

ChrY-

   

x

x

  

x

x

    

ChrX-

   

x

x

   

x

    

HIV data set

215 F,Y

x

x

x

x

x

 

x

x

x

x

x

x

x

41 L

x

 

x

x

x

x

x

x

x

x

x

 

x

70 R

x

x

x

x

x

 

x

x

x

x

 

x

 

67 N

x

 

x

x

x

 

x

x

x

x

 

x

 

219 E,Q

  

x

x

x

 

x

x

x

x

 

x

 

210 W

  

x

x

x

x

x

x

x

    

GLIOBLASTOMA data set

 

23

29

73

99

102

89

102

85

131

22

10

22

11

  1. The thresholds for the method of Brodeur are 0.1,0.33 and 0.17 respectively
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BMC Bioinformatics

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