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Fig. 5 | BMC Bioinformatics

Fig. 5

From: C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

Fig. 5

Pattern Search module (red arrow) in Control Panel showing a) overlaps filter of C-State set to display genes with bivalently marked promoters (−5 kb to +2 kb of tss) in escs and b) Two consecutive feature count filters added to the chain and set to further refine “clean” bivalent promoters (devoid of the other 2 marks, namely H3K36me3 and H3K9ac). c view accordion of C-State with the filtered output - a single gene (DES) that is bivalently marked in H1-hESC cells at the TSS while carrying active marks in K562 (and HeLa) and enriched for repressive H3K27me3 in GM12878 cells

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BMC Bioinformatics

ISSN: 1471-2105

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