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Table 3 Summary of co-expression relationships among CRC-related genes, CRC-related miRNAs, and TFs from TCGA

From: Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer

Co-expression relationship

Number of pairs

Number of miRNAsa

Number of genes

Number of TFsb

miRNA-genec

550,079

567

19,570

-

miRNA-TFd

28,563

553

-

1141

TF-genee

1,126,334

-

19,701

1158

TF-miRNAf

60,794

570

-

1201

  1. amiRNA: microRNA
  2. bTF: transcription factor
  3. cmiRNA-gene: anti-correlation between miRNA and gene expression
  4. dmiRNA-TF: anti-correlation between miRNA and TF expression
  5. eTF-gene: correlation between TF and gene expression
  6. fTF-miRNA: correlation between TF and miRNA expression
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BMC Bioinformatics

ISSN: 1471-2105

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