Organism | D. melanogaster | M. musculus | A. thaliana | S. cerevisiae |
---|---|---|---|---|
GEO accession | GSE80323 | GSE86865 | GSE89850 | GSE83827 |
reference | [16] | [17] | [18] | [19] |
# exp. genes | 16383 | 24516 | 25170 | 6722 |
# merged genes | 7237 | 25302 | 5903 | 4782 |
type | paired | single | paired | single |
# replicates | 4 | 3 | 3 | 2 |
# reads | 27M–33M | 39M–47M | 12M–16M | 10M–14M |
# hits | 28M–34M | 53M–70M | 12M–15M | 13M–17M |
# fc genes | 1446 | 13 | 4622 | 546 |
# htsc genes | 1432 | 13 | 4557 | 546 |
# mm genes | 1441 | 10 | 4599 | 388 |
# fc and htsc | 1420 | 13 | 4503 | 546 |
# fc and mm | 1415 | 10 | 4534 | 387 |
# htsc and mm | 1399 | 10 | 4458 | 387 |
# mm merged only | 191 | 2 | 394 | 97 |
fc time | 1mn28– | 1mn25– | 0mn46– | 0mn16– |
 | 1mn56 | 2mn38 | 1mn10 | 0mn29 |
htsc time | 36mn– | 21mn– | 20mn– | 4mn11– |
 | 46mn | 25mn | 26mn | 5mn58 |
mm time | 2mn35– | 2mn06– | 1mn19– | 0mn20– |
 | 3mn31 | 2mn42 | 1mn43 | 0mn28 |
mm time unsorted | 3mn31– | 2mn22– | 1mn28– | 0mn24– |
 | 4mn18 | 2mn53 | 2mn11 | 0mn31 |