Table 2 Assembly result with or without low coverage penalty
Before UCHIME | After UCHIME | |||
|---|---|---|---|---|
with penalty | without penalty | with penalty | without penalty | |
# of gene contigs | 13 | 14 | 7 | 7 |
# of gene recoverd | 6 | 6 | 5 | 4 |
# misassembled contigs | 0 | 0 | 0 | 0 |
# partially unaligned contigs | 2 | 3 | 0 | 0 |
# mismatches per 100kbp | 543.9 | 997.1 | 149.9 | 208.8 |
The gene fraction of each recovered rplB genes (%) | ||||
Bacteroides vulgatus | 82.5 | 82.5 | 82.5 | 82.5 |
Deinococcus radiodurans | 99.6 | 99.6 | 99.6 | 99.6 |
Rhodobacter_sphaeroides | 64.3 | 64.3 | 64.3 | 64.3 |
Staphylococcus_aureus | 99.6 | 99.6 | 99.6 | 99.6 |
Staphylococcus_epidermidis | 99.6 | 99.6 | – | – |
Streptococcus_mutans | 84.3 | 84.3 | 55.0 | – |