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Table 3 Most relevant bacterial species for the top IBD microbiota sample presented in Fig. 3

From: Interpretation of microbiota-based diagnostics by explaining individual classifier decisions

Species name IS-pro peak(s) Presence Relevance
Escherichia coli 735 + 0.62
Alistipes finegoldii 396 0.57
Alistipes finegoldii 230 0.52
unclassified Proteobacterium 747 + 0.35
Lachnospiraceae sp. 606 + 0.3
Alistipes putredinis 235 0.29
unclassified Firmicute 326 + −0.26
Finegoldia magna 306 + 0.24
Parabacteroides distasonis 461 + 0.23
Morganella morganii 855 + −0.23
Alistipes finegoldii 400 0.21
Bacteroides fragilis 605 + −0.21
Escherichia coli 827 + 0.19
Alistipes putredinis 236 0.18
Streptococcus sp. 321 + 0.17
unclassified Firmicute 525 + 0.17
Bacteroides vulgatus 479 0.16
Bacteroides sp. 594 + 0.16
Alistipes finegoldii 407 0.15
Escherichia coli 828 −0.14
Bacteroides fragilis 537 0.05
  1. ’+’ and’-’ indicate whether a peak is present or absent in a sample, and needs to be coupled with the relevance for interpretation. Ranking is based on absolute relevance values; Classification was done by a linear SVM