Table 4 LCS-TA results for predicted models of 5TPY structure in the sequence-dependent mode
From: LCS-TA to identify similar fragments in RNA 3D structures
Model | MCQ threshold | 10° | 15° | 20° | 25° | ≥30° | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | LCS | MCQ | ||
(a) Human category | |||||||||||
Chen_1 | 0 | n/a | 12 | 14.44° | 20 | 19.62° | 71 | 23.81° | 71 | 23.81° | |
Das_1 | 12 | 8.78° | 70 | 14.98° | 71 | 15.33° | 71 | 15.33° | 71 | 15.33° | |
Dokholyan_1 | 0 | n/a | 8 | 13.14° | 35 | 19.40° | 71 | 23.21° | 71 | 23.21° | |
Feng_1 | 0 | n/a | 13 | 14.25° | 71 | 19.41° | 71 | 19.41° | 71 | 19.41° | |
Lee_1 | 0 | n/a | 28 | 15.0°0 | 71 | 18.57° | 71 | 18.57° | 71 | 18.57° | |
YagoubAli_1 | 0 | n/a | 15 | 14.45° | 28 | 19.68° | 71 | 23.79° | 71 | 23.79° | |
(b) Server category | |||||||||||
3dRNA_1 | 0 | n/a | 0 | n/a | 18 | 19.39° | 35 | 23.81° | 71 | 26.37° | |
LeeAS_1 | 0 | n/a | 16 | 14.87° | 59 | 19.89° | 71 | 20.71° | 71 | 20.71° | |
RNAComposer_1 | 9 | 9.24° | 17 | 13.69° | 28 | 19.63° | 71 | 23.48° | 71 | 23.48° | |
RW3D_1 | 11 | 9.98° | 30 | 14.56° | 71 | 17.20° | 71 | 17.20° | 71 | 17.20° | |
simRNA_1 | 0 | n/a | 20 | 14.93° | 68 | 19.95° | 71 | 20.61° | 71 | 20.61° | |