Skip to main content

Table 1 The datasets used for comparing PPI prediction methods

From: SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome

Dataset PPIs Website
  All Training Testing  
Park and Marcotte 24,718 14,186 1250 www.marcottelab.org/differentialGeneralization
Biogrid 215,029 100,000 10,000 https://thebiogrid.org
HPRD release 9 34,044 10,000 1000 www.hprd.org
InnateDB experim. validated 165,655 65,000 6500 www.innatedb.com
InnateDB manually curated 9913 3600 360 www.innatedb.com
IntAct 111,744 52,500 5250 www.ebi.ac.uk/intact
MINT 16,914 7000 700 mint.bio.uniroma2.it
  1. The second column contains the total number of PPIs, while the third the fourth columns give the number of PPIs used for training and testing, respectively, in the C1, C2, and C3 tests