SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome

BMC Bioinformatics

Table 1 The datasets used for comparing PPI prediction methods

Dataset	PPIs			Website
	All	Training	Testing
Park and Marcotte	24,718	14,186	1250	www.marcottelab.org/differentialGeneralization
Biogrid	215,029	100,000	10,000	https://thebiogrid.org
HPRD release 9	34,044	10,000	1000	www.hprd.org
InnateDB experim. validated	165,655	65,000	6500	www.innatedb.com
InnateDB manually curated	9913	3600	360	www.innatedb.com
IntAct	111,744	52,500	5250	www.ebi.ac.uk/intact
MINT	16,914	7000	700	mint.bio.uniroma2.it

The second column contains the total number of PPIs, while the third the fourth columns give the number of PPIs used for training and testing, respectively, in the C1, C2, and C3 tests

ISSN: 1471-2105