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Fig. 6 | BMC Bioinformatics

Fig. 6

From: TRAVeLer: a tool for template-based RNA secondary structure visualization

Fig. 6

Traveler’s ability to recreate layouts. On the left hand side, we took a structure with two hairpins (a), removed part of a stem and used the original structure as the template (b). Then we reinserted the residues and used (b) as a template to obtain (c). Similarly, (d), (e) and (f) show re-creation of the starting structure with a more drastic middle step where the two hairpins loose residues so that the remaining residues form a loop. f demonstrates that Traveler is able to successfully recreate the original structure. For the purpose of clarity, the new residues were labeled I and shown in red, while the residues which needed to be repositioned are shown in blue

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