Fig. 7
From: Swellix: a computational tool to explore RNA conformational space
HERV Minimum Free Energy and Centroid Structures. The minimum free energy structure (MFE) and centroid structure for the 141-nucleotide HERV sequence (Genbank # AY944072.1)are shown. Base pairs are colored according to base pair probabilities computed with thermodynamic parameters using the Vienna Program [38]. The same sequence folded using the RNAStructure program generates an MFE structure and 6 additional suboptimal structures, none of which contain the motifs in Table 5