Table 4 Performance comparison of our models with baseline methods
From: Dependency-based long short term memory network for drug-drug interaction extraction
Models | DDI corpus | ||||||||
DrugBank | MEDLINE | Overall | |||||||
P | R | F | P | R | F | P | R | F | |
DLSTM1 | 74.74 | 74.57 | 74.66 | 48.78 | 42.55 | 45.45 | 72.53 | 71.49 | 72.00 |
DLSTM2 | 75.29 | 72.64 | 73.95 | 50.67 | 40.43 | 44.97 | 73.29 | 69.54 | 71.37 |
B-LSTM | – | – | – | – | – | – | 75.97 | 65.57 | 70.39 |
AB-LSTM | – | – | – | – | – | – | 67.85 | 65.98 | 66.90 |
Joint AB-LSTM | – | – | – | – | – | – | 73.41 | 69.66 | 71.48 |
CNN&DCNN | – | – | – | – | – | – | 78.24 | 64.66 | 70.81 |
CNN | 77.02 | 66.74 | 71.52 | 61.43 | 45.26 | 52.12 | 75.72 | 64.66 | 69.75 |
SCNN2 | – | – | – | – | – | – | 72.50 | 65.10 | 68.60 |
SCNN1 | – | – | – | – | – | – | 69.10 | 65.10 | 67.00 |
Kim | – | – | 69.80 | – | – | 38.20 | – | – | 67.00 |
FBK-irst | 66.70 | 68.60 | 67.60 | 41.90 | 37.90 | 39.80 | 64.60 | 65.60 | 65.10 |
UTurku | 73.80 | 53.50 | 62.00 | 59.30 | 16.80 | 26.20 | 73.20 | 49.90 | 59.40 |
NIL_UCM | 56.60 | 57.90 | 57.30 | 35.70 | 15.80 | 21.90 | 53.50 | 50.10 | 51.70 |
Models | PK DDI corpus | ||||||||
– | – | – | – | – | – | P | R | F | |
DLSTM1-multi | – | – | – | – | – | – | 89.89 | 89.89 | 89.89 |
DLSTM1-single | – | – | – | – | – | – | 87.97 | 87.97 | 87.97 |