CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision

BMC Bioinformatics

Table 4 Individual precision and contigs binned from each identified species from the strain dataset from CAMI

Taxon Id	MaxBin		Metawatt		MyCC (default)		MyCC (coverage)		CoMet
	Precision	Contigs binned (%)	Precision	Contigs binned (%)	Precision	Contigs binned (%)	Precision	Contigs binned (%)	Precision	Contigs binned (%)
1	NI	NI	NI	NI	NI	NI	NI	NI	78.33	94.63
2	96.15	100	NI	NI	NI	NI	NI	NI	100	88
3	NI	NI	93.16	63.08	93.58	87.06	93.58	87.06	96.04	92.23
4	88.74	87.31	NI	NI	89.37	98.81	89.37	98.81	100	51.32
5	NI	NI	74.84	56.93	97.94	87.58	97.94	87.58	100	67.61
6	NI	NI	61.84	58.02	83.82	77.03	83.82	77.03	100	77.03
7	NI	NI	96.22	59.89	96.59	90.87	96.59	90.87	98.31	58.17
8	NI	NI	NI	NI	NI	NI	NI	NI	98.33	96.72
9	55.18	86.26	NI	NI	93.46	88.32	93.46	88.32	99.73	50.07
10	NI	NI	80.72	57.41	98.21	77.37	98.21	77.37	NI	NI
11	92.96	96.54	NI	NI	68.18	51.92	68.18	51.92	100	51.15
12	97.25	96.66	83.25	92.29	96.1	89.97	96.1	89.97	100	63.94
13	50	87.5	NI	NI	52.17	75	52.17	75	100	75
14	51.14	63.38	NI	NI	65.22	63.38	65.22	63.38	88.89	67.61
15	53.3	57.74	NI	NI	82.29	85.71	82.29	85.71	98.13	62.13
16	NI	NI	NI	NI	NI	NI	NI	NI	100	62.5
17	NI	NI	NI	NI	78.14	50.55	78.14	50.55	51.09	97.92
18	72.58	93.75	NI	NI	66.1	81.25	66.1	81.25	95.56	89.58
19	NI	NI	NI	NI	NI	NI	NI	NI	100	58.39
20	75.05	94.62	82.2	84.17	92.54	96.77	92.54	96.77	100	96.24
20	73.25	74.78	NI	NI	77.09	94.93	77.09	94.93	NI	NI
22	88.72	87.41	85.23	64.13	89.79	78.15	89.79	78.15	NI	NI
23	93.97	99	84.29	86.51	96.41	98.66	96.41	98.66	100	70.57

Bold data represent the highest precisions and highest percentage of contigs binned for each identified species. NI: Not Identified

ISSN: 1471-2105