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Table 4 Individual precision and contigs binned from each identified species from the strain dataset from CAMI

From: CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision

Taxon Id MaxBin Metawatt MyCC (default) MyCC (coverage) CoMet
  Precision Contigs binned (%) Precision Contigs binned (%) Precision Contigs binned (%) Precision Contigs binned (%) Precision Contigs binned (%)
1 NI NI NI NI NI NI NI NI 78.33 94.63
2 96.15 100 NI NI NI NI NI NI 100 88
3 NI NI 93.16 63.08 93.58 87.06 93.58 87.06 96.04 92.23
4 88.74 87.31 NI NI 89.37 98.81 89.37 98.81 100 51.32
5 NI NI 74.84 56.93 97.94 87.58 97.94 87.58 100 67.61
6 NI NI 61.84 58.02 83.82 77.03 83.82 77.03 100 77.03
7 NI NI 96.22 59.89 96.59 90.87 96.59 90.87 98.31 58.17
8 NI NI NI NI NI NI NI NI 98.33 96.72
9 55.18 86.26 NI NI 93.46 88.32 93.46 88.32 99.73 50.07
10 NI NI 80.72 57.41 98.21 77.37 98.21 77.37 NI NI
11 92.96 96.54 NI NI 68.18 51.92 68.18 51.92 100 51.15
12 97.25 96.66 83.25 92.29 96.1 89.97 96.1 89.97 100 63.94
13 50 87.5 NI NI 52.17 75 52.17 75 100 75
14 51.14 63.38 NI NI 65.22 63.38 65.22 63.38 88.89 67.61
15 53.3 57.74 NI NI 82.29 85.71 82.29 85.71 98.13 62.13
16 NI NI NI NI NI NI NI NI 100 62.5
17 NI NI NI NI 78.14 50.55 78.14 50.55 51.09 97.92
18 72.58 93.75 NI NI 66.1 81.25 66.1 81.25 95.56 89.58
19 NI NI NI NI NI NI NI NI 100 58.39
20 75.05 94.62 82.2 84.17 92.54 96.77 92.54 96.77 100 96.24
20 73.25 74.78 NI NI 77.09 94.93 77.09 94.93 NI NI
22 88.72 87.41 85.23 64.13 89.79 78.15 89.79 78.15 NI NI
23 93.97 99 84.29 86.51 96.41 98.66 96.41 98.66 100 70.57
  1. Bold data represent the highest precisions and highest percentage of contigs binned for each identified species. NI: Not Identified
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BMC Bioinformatics

ISSN: 1471-2105

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