Table 3 Compression ratios of different tools on 8 FASTQ datasets
From: GTZ: a fast compression and cloud transmission tool optimized for FASTQ files
Dataset | Compression ratio (%) | ||||||
|---|---|---|---|---|---|---|---|
GTZ | DSRC2 | QUIP | LW-FQZip | Fqzcomp | LFQC | pigz | |
ERR233152 | 15.9 | 16.7 | 19 | 19 | 16.8 | 8 | 26.4 |
SRR935126 | 18.6 | 19.6 | 17.7 | 20.5 | 17.8 | 9.9 | 30.2 |
SRR489793 | 22.8 | 22.7 | 22.6 | 25.5 | 22.5 | 12.8 | 34.4 |
SRR801793 | 21.4 | 21.9 | 21.1 | 21.2 | 20.8 | 12.3 | 34.1 |
SRR125858 | 19.4 | 19.5 | 18.9 | 23.1 | 28.9 | 17.6 | 31 |
SRR5419422 | 12.8 | 13.9 | 10.9 | 12.5 | 12 | ERROR | 22 |
ERR1137269 | 12.2 | 13.4 | 12.8 | 14.3 | 11.9 | ERROR | 21.9 |
NA12878 (read 2) | 19.8 | 24 | 20.4 | TLE | 19.9 | TLE | 24.7 |
avg | 17.86 | 18.96 | 17.93 | 19.44 | 18.83 | 12.12 | 28.09 |
SD | 3.87 | 3.97 | 4.07 | 4.64 | 5.60 | 3.62 | 5.05 |
CV | 0.22 | 0.21 | 0.23 | 0.24 | 0.30 | 0.30 | 0.18 |