Table 4 Compression time of different tools on 8 FASTQ datasets
From: GTZ: a fast compression and cloud transmission tool optimized for FASTQ files
Dataset | Size (MB) | Compression Time (s) | ||||||
|---|---|---|---|---|---|---|---|---|
GTZ | DSRC2 | QUIP | LW-FQZip | Fqzcomp | LFQC | pigz | ||
ERR233152 | 556.1 | 19 | 13 | 10 | 284 | 13 | 297 | 3 |
SRR935126 | 9754.6 | 49 | 40 | 195 | 3966 | 191 | 3610 | 129 |
SRR489793 | 12,807 | 51 | 49 | 343 | 4893 | 289 | 4253 | 122 |
SRR801793 | 2756.2 | 43 | 28 | 59 | 1212 | 73 | 1143 | 22 |
SRR125858 | 50,744.2 | 178 | 153 | 1044 | 18,300 | 977 | 10,202 | 481 |
SRR5419422 | 15,094.6 | 26 | 7 | 329 | 4234 | 267 | ERROR | 67 |
ERR1137269 | 56,543 | 117 | 32 | 806 | 12,018 | 851 | ERROR | 213 |
NA12878 (read 2) | 202,631 | 820 | 700 | 4703 | TLE | 4389 | TLE | 620 |
Average speed (MB/s) | Â | 267.4 | 648.8 | 49.7 | 2.9 | 49.6 | 33.7 | 176.8 |