Table 2 Execution time (in seconds) of serial ISS based tiled code for some tile sizes, N =2200
From: Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding
No. | b1 | b2 | b3 | Time |
|---|---|---|---|---|
1 | 1 | 128 | 16 | 3.2760 |
2 | 1 | 128 | 8 | 3.2910 |
3 | 1 | 150 | 8 | 3.3264 |
4 | 1 | 128 | 12 | 3.3506 |
5 | 1 | 96 | 16 | 3.3602 |
6 | 1 | 128 | 24 | 3.3913 |
7 | 1 | 150 | 12 | 3.4042 |
8 | 1 | 128 | 6 | 3.4247 |
9 | 1 | 96 | 8 | 3.4357 |
10 | 1 | 200 | 16 | 3.4645 |
... | ... | ... | ... | ... |
467 | 2 | 150 | 16 | 6.6576 |
... | ... | ... | ... | ... |
Execution time of the original code: | 12.2802 | |||
7985 | 400 | 1 | 1 | 12.2872 |
7986 | 400 | 48 | 1 | 12.3162 |
... | ... | ... | ... | ... |
8000 | 1 | 1 | 1 | 24.8607 |