Skip to main content

Table 3 Execution time (in seconds) of parallel ISS based tiled code for some tile sizes, N = 5000, 32 threads used

From: Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding

No. b1 b2 b3 Time
1 1 96 8 7.8751
2 1 150 12 8.0246
3 1 96 12 8.1903
4 1 128 12 8.1952
5 1 128 16 8.2199
6 1 128 6 8.2816
7 1 150 16 8.2831
8 1 50 8 8.3449
9 1 128 8 8.3841
10 1 96 6 8.4597
... ... ... ... ...
143 2 6 300 10.4351
... ... ... ... ...
Execution time of the original code:     334.3200
7993 2 1 2 335.3765
7994 1 2 2 411.5945
... ... ... ... ...
8000 1 2 1 889.6510