SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

Table 3 Dependence of the core performance measures of HH-MOTiF on the approach. Generation of this table is based on the option set A1 and its variants, as specified in Additional file 1

Operating count mode	Adjustment for sequence length	Treat nans as zeros	Symbol-wise
Operating count mode	Adjustment for sequence length	Treat nans as zeros	TPR	PPV	FPR
Gross	no	no	0.211	0.420	0.011
	no	yes	0.211	0.213	0.011
	yes	no	0.216	0.429	0.014
	yes	yes	0.216	0.217	0.014
Symbol-resolved	no	no	0.210	0.358	0.007
	no	yes	0.210	0.181	0.007
	yes	no	0.215	0.367	0.009
	yes	yes	0.215	0.185	0.009

ISSN: 1471-2105