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Table 3 Dependence of the core performance measures of HH-MOTiF on the approach. Generation of this table is based on the option set A1 and its variants, as specified in Additional file 1

From: SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data

Operating count mode Adjustment for sequence length Treat nans as zeros Symbol-wise
TPR PPV FPR
Gross no no 0.211 0.420 0.011
yes 0.211 0.213 0.011
yes no 0.216 0.429 0.014
yes 0.216 0.217 0.014
Symbol-resolved no no 0.210 0.358 0.007
yes 0.210 0.181 0.007
yes no 0.215 0.367 0.009
yes 0.215 0.185 0.009