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Table 2 LocText found novel GO annotations in latest publications; extrinsic evaluation

From: LocText: relation extraction of protein localizations to assist database curation

Org.

#

C

C&NR

C&NT

C&NR,NT

Human

20

13 (65%)

10 (50%)

9 (45%)

7 (35%)

Yest

20

17 (85%)

12 (60%)

6 (30%)

4 (20%)

Cress

20

16 (80%)

11 (55%)

9 (45%)

7 (35%)

Total

60

46 (77%)

33 (55%)

24 (40%)

18 (30%)

  1. LocText mined protein location relations not tagged in Swiss-Prot in latest publications: 2012-2017 for (column Org.=organism) human and 1990-2017 for yeast and cress. (#) 60 novel text-mined annotations (20 for each organism) were manually verified: (C=correct) 77% were correct; 55% were correct and had no relation (NR) in Swiss-Prot; 40% were correct and were not in text (NT) descriptions of Swiss-Prot; 30% were correct and neither had a relation nor appeared in text descriptions