Fig. 2
From: MutScan: fast detection and visualization of target mutations by scanning FASTQ data
Screenshot of a MutScan’s pile-up result. The demonstrated mutation is EGFR p.T790 M (hg19 chr7:55,249,071 C > T), which is an important drugable target for lung cancer. This mutation’s (L, M, R) sequences are provided at the top of this figure, and M is the mutation base (C > T). The color of the bases indicates the quality score (green and blue indicate high quality, red indicates low quality). This screenshot is incomplete, and the complete report can be found at http://opengene.org/MutScan/report.html