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Table 2 Time (in second) and memory (in megabytes) used by MutScan for processing FASTQs and mutations in different sizes

From: MutScan: fast detection and visualization of target mutations by scanning FASTQ data

Mutation Numberâž”

5 K Mutations

10 K Mutations

50 K Mutations

MutScan Modeâž”

Simplified

Normal

Simplified

Normal

Simplified

Normal

5Gbp FASTQ

255 s, 672 M

370 s, 1542 M

289 s, 683 M

428 s, 2110 M

380 s, 943 M

537 s, 9113 M

10Gbp FASTQ

402 s, 692 M

621 s, 2260 M

447 s, 714 M

648 s, 3201 M

624 s, 1113 M

2279 s, 15,569 M

50Gbp FASTQ

1622s, 769 M

2956 s, 8352 M

1897s, 929 M

3469 s, 12,440 M

2729 s, 2601 M

10,927 s, 69,389 M

  1. The input was paired-end data, and the base number was the sum of read1 and read2. Both the simplified mode and the normal mode were evaluated and shown in the table
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BMC Bioinformatics

ISSN: 1471-2105

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