From: FMLRC: Hybrid long read error correction using an FM-index
Method | Reads aligned | TP | FN | Sens. | Spec. | Gain | CPU (s) | Mem (GB) |
---|---|---|---|---|---|---|---|---|
E. coli K12 | ||||||||
Canu | 58982 | 657793 | 1571579 | 0.2951 | 0.9987 | 0.1482 | 17421 | 2.99 |
CoLoRMap | 81485 | 5538038 | 35474190 | 0.1350 | 0.9998 | 0.1332 | 137777 | 23.06 |
FMLRC | 81851 | 13562639 | 15069242 | 0.4737 | 0.9996 | 0.4689 | 11015 | 4.60 |
Jabba | 75620 | 15553372 | 111609 | 0.9929 | 0.9999 | 0.9920 | 22922 | 63.87 |
LoRDEC | 81138 | 3278911 | 36691424 | 0.0820 | 0.9998 | 0.0808 | 61305 | 2.08 |
LoRMA | 81051 | 1135657 | 144161 | 0.8874 | 0.9999 | 0.8669 | 54240 | 45.72 |
Sprai | 75532 | 463636 | 293039 | 0.6127 | 0.9999 | 0.5783 | 44302 | 33.53 |
S. cerevisiae W303 | ||||||||
Canu | 142765 | 1562542 | 5441239 | 0.2231 | 0.9992 | 0.1401 | 108175 | 3.33 |
CoLoRMap | 210423 | 18901871 | 79065115 | 0.1929 | 0.9992 | 0.1857 | 2815200 | 45.49 |
FMLRC | 211270 | 31849332 | 49204291 | 0.3929 | 0.9991 | 0.3829 | 68519 | 17.77 |
Jabba | 223385 | 29893606 | 42670 | 0.9986 | 0.9999 | 0.9967 | 187968 | 367.92 |
LoRDEC | 210151 | 8468872 | 96577493 | 0.0806 | 0.9997 | 0.0776 | 212495 | 3.56 |
LoRMA | 204323 | 3063164 | 221583 | 0.9325 | 0.9999 | 0.9176 | 223358 | 49.52 |
Sprai | 192670 | 2013269 | 3063751 | 0.3965 | 0.9996 | 0.3288 | 215261 | 49.52 |
A. thaliana Ler-0 | ||||||||
Canu | 574065 | 12002535 | 72017120 | 0.1429 | 0.9986 | 0.1030 | 1301971 | 10.92 |
CoLoRMap | 1075381 | 170235345 | 2056204621 | 0.0765 | 0.9983 | 0.0737 | 6802359 | 106.08 |
FMLRC | 1447042 | 442064624 | 1164804073 | 0.2751 | 0.993 | 0.2601 | 708910 | 16.26 |
Jabba | 813495 | 320742341 | 2945173 | 0.9909 | 0.9968 | 0.9724 | 3641309 | 333.44 |
LoRDEC | 1113617 | 78276025 | 2022520259 | 0.0373 | 0.9979 | 0.0337 | 1111800 | 3.42 |
LoRMA | 903298 | 2217661 | 2778223 | 0.4439 | 0.9986 | 0.3715 | 17281259 | 70.28 |
Sprai | 751684 | 18960255 | 30734331 | 0.3815 | 0.9996 | 0.3631 | 5996657 | 8.11 |