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Table 8 Comparison of ten quantiles for the distributions of the variable importances, across the SNPs, for T-Trees and the hybrid FLTM / T-Trees approach. Illustration with the case of Rheumatoid arthritis, chromosome 19

From: A method combining a random forest-based technique with the modeling of linkage disequilibrium through latent variables, to run multilocus genome-wide association studies

   

top300

top200

top100

top50

top20

top10

max

25%

50%

75%

99.99439%

99.99626%

99.99813%

99.99907%

99.99963%

99.99981%

100%

Quantiles T-Trees

 

1.7e-05

5.0e-05

1.1e-04

6.0e-03

1.4e-02

2.8e-02

2.0e-01

3.0e-01

3.4e-01

3.7e-01

Quantiles hybrid approach

 

1.8e-06

1.7e-05

6.1e-05

1.5e-02

2.6e-02

1.0e-01

2.5e-01

3.3e-01

3.6e-01

3.9e-01

  1. The bold face characters highlight the highest value observed between T-Trees and the hybrid approach